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Can
I have more than one family open at a time?
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Yes! Cyrillic has a "Multiple document interface". This means that
you can have several files open at once, allowing you to compare families and copy
information between them.
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What are
the limitations of the software?
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Maximum number of Individuals per family
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10000
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| Spouses per person
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No limit
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| Sibs per pregnancy
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6
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Sibs drawn per sibship (only applies when creating sibships)
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25
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| Markers per chromosome
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250
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| Markers per family
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150
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| Number of alleles
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16 - if phenotype and allele names are alterable
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| 40 - for numbered alleles
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150 - if only allele names are alterable
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| Phenotypes
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820
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| Diseases
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No limit
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| Affection classes
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25
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| Quantitative traits per locus
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3
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| Quantitative loci per family
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1
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Cyrillic 2 can import the following data file
types:
- Standard Cyrillic format
- Pedigree/Draw Macintosh
- LinkSys Import/Export
- Both varieties of MLINK pedigree files
- CriMap format
- An extended GEDCOM format
See Questions 13
and
14
for further information.
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Can I run Cyrillic on my
Macintosh?
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Cyrillic is designed for Microsoft Windows. However, if your Macintosh has a
DOS card or SoftWindows (A Windows emulation application) you will be able to run
Cyrillic.
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My
toolbar does not have Cut, Copy and Paste buttons as shown in the manual.
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The toolbar for Cyrillic 2 was designed to be used with a SuperVGA display.
When it is run on a VGA display, some of the buttons are not displayed because of the
limited display area. If you are unable to use SVGA mode, choose these commands from the
Edit menu.
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I
am getting a General Protection Fault whenever I use Cyrillic.
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Please ensure you are using the latest release version of Cyrillic.
Free patches
are available for versions 2.0.x and
2.1.x. If these don't help then please contact us at support@cyrillicsoftware.com
with full details of your problem.
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Where can I
get the LINKAGE or FASTLINK packages?
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We are grateful to Alejandro Schaffer for allowing us to distribute a version
of FASTLINK suitable for use with Cyrillic's example files, such as the Breast Cancer
example.
Download
for Windows 95/98/NT
Download
for Windows 3.1
The source code for these and other programs (for
example, Cri-Map, LINKAGE) are available from Web
Resources for Genetic Linkage Analysis
, courtesy of the Laboratory of Statistical
Genetics at Rockefeller University. There are also links from here to other web and ftp
sites around the world.
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Can you
give me precise details of what I need to with the file I have downloaded?
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If you run the downloaded file by double-clicking it you will be prompted to
extract the files to either C:\FL4WIN32 (when running FL4WIN32.EXE) or C:\FL3WIN16 (when
running FL3WIN16). It is recommended that you accept this default directory.
To perform a linkage analysis:
Run Cyrillic and open your family file, ensuring that the
data directory has been correctly set.
- Choose File|Export->MLINK, select the markers to analyze
and then navigate to e.g. C:\LINKAGE.
Note, the
Export File Location dialog also has check boxes to Run MLINK, Rewrite the locus file, and
View the results (OUTFILE.DAT).
- Follow through the remaining prompts, setting values as are
appropriate to your analysis.
- The analysis will proceed -- a DOS Window appears showing
the progress of the analysis. A successful run is usually accompanied by a long scrolling
list of results in this window.
- If prompted, close the DOS window and the results will be
displayed in NOTEPAD. You can view the results at a later date in e.g.
C:\LINKAGE\OUTFILE.DAT
To perform a Breast Cancer analysis:
Run Cyrillic using the "Breast Cancer Example"
icon and open your family file, or the example file BRCA.FAM
Choose "Data|Run BrCa- Breast Cancer
Susceptibility"
The analysis will now run to completion without any further
prompting. See the Breast Cancer Module
page.
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How can I
increase the size of the text on printouts of alphabetic and numeric lists?
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Choose File|Print Options|Setup|Options and then change the Scaling of the
output, say, to 125 percent.
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How can I make
the symbols larger on a printout?
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Use the Print Preview Option. In this mode, you can increase or decrease the
size of the family in relation to the original using the percentage zoom drop-down list,
in the toolbar as well as other useful features such as scale to fit and the ability to
position the pedigree over a number of pages.
You can also make symbols larger without rescaling the drawing by modifying the Symbol
Width attribute under the Display Format menu.
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Is it possible to delete
parents without losing their offspring?
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If you delete parents, Cyrillic will be unable to establish that the siblings
are related. You can hide individuals, rather than delete them in order to maintain
relationships between individuals. You can either hide partners from the display (See
Options menu) or, in the Print Options dialog box you can choose Ignore Nameless Persons
whenever you are printing a list.
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Is there a way to
indicate that someone is deceased without putting "?" or a death date in the
Date of Death field (individual Data Dialog)
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No. However, because you control what information is shown on the pedigree,
you do not need to display the date on-screen (See Format|Display Format).
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Where can I find
out more information about the GEDCOM format?
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The
GEDCOM standard release v5.5 manual can be viewed online.
The current
official GEDCOM documents are available at at ftp.gedcom.org
.
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Is it possible to
import data into Cyrillic from a database?
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The easiest way to import information from a database into Cyrillic 2 is to
export your data as an ASCII file (Plain text file) with the information arranged within
that file in one of the formats supported by Cyrillic 2. You will need to set up a
"macro" or "export filter" that will allow you to automate the
procedure of automatically formatting the ASCII output from your database into one of the
eight popular genetic file formats supported by Cyrillic 2. However, you will need to
investigate yourself as to how to set up such macros/filters - please refer to the
documentation that comes with your database program.
You will need to manipulate your ASCII files to match the GEDCOM format if you want rich
and extensive data transfer. However, if you just need basic patient information and
marker details then we advise following the Standard Cyrillic format.
Another option would be to export a plain ASCII file from
your database, open it in a text editor (such as Word, or Windows Notepad) and manually
change the format to match that of your chosen import format although this can sometimes
be rather time-consuming.
You can find more information about this whole topic beginning on page 120 of the Cyrillic
2.0 manual - all of the import formats are also described in detail in this particular
section.
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